Breast and Colon Cancer Classification from Gene Expression Profiles Using Data Mining Techniques
Symmetry • 2020
Publication Information
Authors
Mohamed Loey, Mohammed Wajeeh Jasim, Hazem M EL-Bakry, Mohamed Hamed N Taha, Nour Eldeen M Khalifa
Keywords
Symmetry
Journal
Symmetry
Publisher
mdpi
Volume
12
Issue
3
Pages
16
publication.type
International
Paper Link
Open Link
Supplementary Materials
Not Available
Abstract
Early detection of cancer increases the probability of recovery. This paper presents an intelligent decision support system (IDSS) for the early diagnosis of cancer based on gene expression profiles collected using DNA microarrays. Such datasets pose a challenge because of the small number of samples (no more than a few hundred) relative to the large number of genes (on the order of thousands). Therefore, a method of reducing the number of features (genes) that are not relevant to the disease of interest is necessary to avoid overfitting. The proposed methodology uses the information gain (IG) to select the most important features from the input patterns. Then, the selected features (genes) are reduced by applying the grey wolf optimization (GWO) algorithm. Finally, the methodology employs a support vector machine (SVM) classifier for cancer type classification. The proposed methodology was applied to two datasets (Breast and Colon) and was evaluated based on its classification accuracy, which is the most important performance measure in disease diagnosis. The experimental results indicate that the proposed methodology is able to enhance the stability of the classification accuracy as well as the feature selection
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