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publication name Selective recognition of c-MYC Pu22 G-quadruplex by a fluorescent probe
Authors Qianqian Zhai, Chao Gao, Jieqin Ding, Yashu Zhang, Barira Islam, Wenxian Lan, Haitao Hou, Hua Deng, Jun Li, Zhe Hu, Hany I Mohamed, Shengzhen Xu, Chunyang Cao, Shozeb M Haider, Dengguo Wei
year 2019
keywords
journal Nucleic Acids Research
volume 47
issue 5
pages 2190-2204
publisher Oxford University Press
Local/International International
Paper Link https://academic.oup.com/nar/article/47/5/2190/5316737
Full paper download
Supplementary materials Hany Ibrahim Mohamed Ibrahim_NARsupplemental_file.pdf
Abstract

Nucleic acid mimics of fluorescent proteins can be valuable tools to locate and image functional biomolecules in cells. Stacking between the internal G-quartet, formed in the mimics, and the exogenous fluorophore probes constitutes the basis for fluorescence emission. The precision of recognition depends upon probes selectively targeting the specific G-quadruplex in the mimics. However, the design of probes recognizing a G-quadruplex with high selectivity in vitro and in vivo remains a challenge. Through structure-based screening and optimization, we identified a light-up fluorescent probe, 9CI that selectively recognizes c-MYC Pu22 G-quadruplex both in vitro and ex vivo. Upon binding, the biocompatible probe emits both blue and green fluorescence with the excitation at 405 nm. With 9CI and c-MYC Pu22 G-quadruplex complex as the fluorescent response core, a DNA mimic of fluorescent proteins was

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