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publication name Genetic variants in MYF5 affected growth traits and beef quality traits in Chinese Qinchuan cattle
Authors ChunpingZhaoaSayed Haidar AbbasRazaaRajwaliKhanaAhmedSabekbcSamiullahKhandIrfanUllaheSameeullahMemonfAyman Hassan AbdEl-AzizgMujahid AliShahhLiShijunaLiyunWangaXuchunLiuaYiweiZhangaLinshengGuiiLinsenZana
year 2020
keywords MYF5 SNP Cattle Growth trait Beef quality trait
journal Genomics
volume 112
issue 4
pages 2804-2812
publisher Elsevier
Local/International International
Paper Link https://www.sciencedirect.com/science/article/pii/S0888754320301099?via%3Dihub
Full paper download
Supplementary materials Not Available
Abstract

Myogenic factor 5 plays actively roles in the regulation of myogenesis. The aims of this study are to identify the evolution information of MYF5 protein among 10 domestic and mammalian animals, to uncover the expression patterns of MYF5 gene in calves and adults of Qinchuan cattle, and to expose the genetic variants of the MYF5 gene and explore its effect on cattle growth traits and beef quality traits in Qinchuan cattle. The bioinformatics results showed that the MYF5 proteins highly conserved in different mammalian or domestic animals apart from chicken. The expression level of MYF5 gene in the heart, muscle, lung, large intestine and liver was greater than that of other tissues. PCR amplicons sequencing identified four novel SNPs at g.5738A>G, g.5785C>T and g.5816A>G in the 3rd exon region and g.6535A>G in the 3’ UTR. Genotypic frequencies of g.5785C>T was harshly deviated from the HWE (P < .05). Genetic diversity was low or intermediate for the four SNPs and those SNPs were in the weak linkage disequilibrium. Association analysis results indicated g.5785C>T, g.5816A>G and g.6535A>G significant effect on growth performance and beef quality traits of Qinchuan cattle. H1H3 diplotype had greater body size and better beef quality. All the results implicate that the MYF5 gene might be applied as a promising candidate gene in Qinchuan cattle breeding.

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